_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-15
 Query name: gi|1043260120|ref|NP_001316366.1| ethanolaminephosphotransferase 1 [Danio rerio]
 Query range: 79-400  (total 400)

 Target: /data/www-rg/seblastian_results/308309429/tempfiles/temptarget.fasta
 Chromosome: CM007942.1:subseq_415206,136253_ Strand: +
 Positions:
 -Exon 1  55749        55824
 -Exon 2  71772        72034
 -Exon 3  81270        81378
 -Exon 4  81514        81562
 -Exon 5  82621        82801
 -Exon 6  83354        83533
 -Exon 7  86149        86253

 Redox box: no

Query   GEGHTHVPSWVWIAAGLFNFLAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWACVFFVATVYSVFGRGETGVSVVTLYYLLWV
         ||/||||||||/||||||||||||| <  15947bp   > ||||||||||||||||||||||||||||||||||||||/|||| /|| | ||||/|||
Target  AEGYTHVPSWVWVAAGLFNFLAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWACVFFVATVYSIFGRGPSGVGVATLYYILWV
        gggtacgcatgtggggctatcgtacg                ggggacgacaattaccggctgcgcgatgtgttggagttatgcgcagggggatttactg
        cagacatcggtgtccgttattcact                agtagaacggcacccctgattaagtaggcgttttcctacttgggcggtgtcctaattgt
        taacttgacgtgctaatcccggtat                ctgttggggttcccaaggggtctcgccgctgccgcccccatgtcgctgcgcggcccggg
                                                                                                            

Query   VLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISIVYIITAVVGVETWYKPVFLNIHYRDLFTVMIIG <---Intron---> CL
        ||||||||||||||||||||||||||||| <   9235bp   > ||||||| ||/|||||||/|// | ||||||| ||/| <   135bp    > | 
Target  VLFSFILSHWEKYNTGILFLPWGYDISQV                TISIVYIFTAMVGVETWYEPIWWNFHYRDLFTFMILG                CS
        gctttactctgataagactcctgtgaacg                aatagtatagaggggattgcattatctcgctataacg                tt
        tttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactggataagattctttt                ggc
        ctcaccgtcggaccaacacgcgatcccag                cctagcccaggtcggggtaacggccccaccctcgcc                ttg
                                                                                                            

Query   FVVTLPMSLYNVFK <---Intron---> AYRNNTLKHSSLYEALLPFFSPVLLFVLSTLWISFSPTNIVQKQPRIFYLMVGTAFSNVT <---Intro
        | |||||||||||| <   1058bp   > | |||||||||/||| ||| ||||| /||//|/ |||/ |/|/|||/|||||||||/||| <   552bp
Target  FTVTLPMSLYNVFK                ASRNNTLKHSSMYEAFLPFLSPVLLCLLSSVWVIFSPSGILQQQPRVFYLMVGTAFANVT          
        tagaccaactagta                gtcaaacacaaatggtcctctcgcctccttgtgattctgacccccagttcaggagtgaga          
        tctctctgtaatta                ccgaactaaggtaacttcttcctttgttcctgtttcccgttaaacgttatttgcctcatc          
        ctgctcgcccccc                ggtttctgacctgcgccccccttccccccctcggtctaccccgggcaccccgggaccttca          
                                                                                                            

Query   n---> CKLIVCQMSNTRCKPLSLLLLPMSIVVLLVISGTVQGGESLVLFIWTAVVLLTHIHYGVSV <---Intron---> VKQLSDHFNIFAFSLKK
            > |||||||||||||/||| ||/||/ |||| //| |   |/|////|||/|/|||||||||| <   2615bp   > ||||||||||||||| |
Target        CKLIVCQMSNTRCQPLSWLLVPMATVVLLAVTGLV-ANETLLIYVWTAIVILTHIHYGVSV                VKQLSDHFNIFAFSLMK
              tacagtcaaaactcccatctgcagaggttggagcg-gagactatgtagagacacactggtg                gaccagctaatgttcaa
              gatttgatgacggactggtttctccttttctcgtt-caactttatgccttttcataagtct                taatgaatattctctta
              tggcgcggtcctcaggcgggtcggggggggtaggt-tcggggccgggcccacacaccagag                gagcctcccctcctggg
                                                                                                            

Query   PNSDUQDEEKIGLKAAEV
        |//||||/ /|||/ |||
Target  PSTDUQDQGRIGLQGAEV
        caagtcgcgcagtcgggg
        cgcagaaaggtgtagcat
        cctcagcggtccggaagt
            *             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1308 ; UGA-SECIS: 1347

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007942.1:subseq_415206,136253_ Strand = + Positions = 87562 - 87643
 Found by:  Infernal (score=29.86) Covels (score=25.64)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -19.64

         ..(((((((...........(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcg----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(({(((((..........([[(((((({(((...................)))}))))))]]).....-..)))))}))..
 target  UGGUAGCAGCAGCGCUUGAAUGAAGAGUGUGUCUGAAAACCGCCAGCGGAGCGACUCACUCUGAGGGAAC-AGGCUGCCAUGA
                             ****           ^^^                       ****